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A Miniconda Python installation is a common prerequisite for Python-based applications in machine learning and other fields.Below is the insurrections of how to install miniconda in your lab directory:
Minicondais a free software package that includes the condapackage and environment manager. https://docs.conda.io/en/latest/miniconda.html
1. Download the Miniconda installer
wget https://
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miniconda/Miniconda3-latest-Linux-x86_64.sh
2. Run the installer
$chmod 755 Miniconda3-latest-Linux-x86_64.sh
$./Miniconda3-latest-Linux-x86_64.sh
3. Configuring Conda
$./conda update conda
$./condaconfig --add channels bioconda
Minicondainstallers contain the condapackage manager and Python
$ condainstall numpy
Creating environments with Conda
$ condainstall bwa
Or a new environment can be created:
$ condacreate -n aligners bwa bowtie hisatstar
Some tools came with singularity image. Please read more about how to use singularity container. You can use module to load singularity as:
Module avail
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