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A Miniconda Python installation is a common prerequisite for Python-based applications in machine learning and other fields.Below is the insurrections of how to install miniconda in your lab directory:

Minicondais a free software package that includes the condapackage and environment manager. https://docs.conda.io/en/latest/miniconda.html

1. Download the Miniconda installer

wget  https://

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repo.

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anaconda.

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com/

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miniconda/Miniconda3-latest-Linux-x86_64.sh


2. Run the installer

$chmod 755 Miniconda3-latest-Linux-x86_64.sh 

$./Miniconda3-latest-Linux-x86_64.sh 


3. Configuring Conda

$./conda update conda

 $./condaconfig --add channels bioconda


Minicondainstallers contain the condapackage manager and Python

   $ condainstall numpy


Creating environments with Conda
  $ condainstall bwa 

Or a new environment can be created:

  $ condacreate -n aligners bwa bowtie hisatstar



Some tools came with singularity image. Please read more about how to use singularity container. You can use module to load singularity as:
Module avail

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